DNAlive [Citation link] displays DNA structure features in relation with genome annotations and functions.
If you click on the help links you will find short videos that will tutor you through the page. Highly recommended!
Please disable your popup blocker ? in order to work with this tool. Page requirements
DNAlive components at the INB bioinformatics platform: INB Web Workflow Enactor & Manager
Choose one: paste or upload a DNA sequence, or enter genomic coordinates.
DNA Sequence (will be plot in DNAlive)
You can also use Blat? to define the coordinates of the input sequence within a genome.
For this, you need to the file first and then select a species Chicken (galGal3) Chimp (panTro2) Fugu (fr2) Human (hg18) Mouse (mm9) Opossum (monDom4) Rat (rn4) Tetraodon (tetNig1) Zebrafish (danRer5)
Genomic coordinates (will be plot in the UCSC Genome Browser)
Sample: (hg18) chr19:54,187,500-54,189,500 <Upstream promoter region of the Glycogen Synthase 1 (GYS1) gene>
Run the dynamics for the bases number to of ? bps. Receive an e-mail with the results? Your address: 100 bps is the standard value and 5,000 bps is the maximum size that our server supports. For values higher than 100, the result can't be displayed in the Jmol applet and you will receive the results in your e-mail. (?)
They will be automatically calculated on the next step, and you will be able to review them. Only available for the 3D and 4D plots, and only for Humans.