Result files download
In this page the results of the analysis performed as well as some intermediate files produced during the calculation can be downloaded for further processing. Some of the analysis can be reproduced off-line using the compressed trajectories and the software package PCASuite.
- Simulation
- Initial structure (PDB format)
- Generated trajectory (Amber CRD format)
- Topology (Amber format, only for visualization of the trajectory)
- Average structure (PDB format)
- Analysis (text files)
- Eigenvalues
- Analyzed Eigenvectors
(The full eigenvectors list can be obtained from the compressed trajectory (sRMSd and gRMSd) using the PCASuite)
- BFactors
- Hinge predictions
- Lindemann coefficients
- Apparent stiffness
- Raw residue correlation
- Collectivity indexes
- Compressed Trajectories (PCZ format)
- Compressed trajectory (standard RMSd)
- Compressed trajectory (gaussian RMSd)
- Complete package (TGZ package)
- All files in a single package
- Analysis reload (TGZ package)
- Analysis reload file. Contains all necessary files to repeat the complete analysis in FlexServ.
File Formats:
| .pdb |
Protein Data Bank file. |
| .crd |
Amber trajectory coordinates. |
| .top |
Amber topology. |
| .pcz |
PCAzip compressed file. This kind of files can be read and created with PCASuite |
| .tgz |
Archive of files packed with tar and compressed with gzip |
| Other extensions |
Text files with the results of the analysis |
