Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
|
1 |
|
2 |
|
3 |
|
4 |
|
5 |
|
6 |
|
7 |
|
8 |
|
9 |
|
10 |
|
11 |
|
12 |
|
13 |
|
14 |
|
15 |
|
16 |
|
17 |
|
18 |
|
5' |
G |
- |
C |
- |
C |
- |
T |
- |
A |
- |
G |
- |
C |
- |
T |
- |
A |
- |
G |
- |
C |
- |
T |
- |
A |
- |
G |
- |
C |
- |
T |
- |
G |
- |
C |
3' |
|
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
3' |
C |
- |
G |
- |
G |
- |
A |
- |
T |
- |
C |
- |
G |
- |
A |
- |
T |
- |
C |
- |
G |
- |
A |
- |
T |
- |
C |
- |
G |
- |
A |
- |
C |
- |
G |
5' |
|
36 |
|
35 |
|
34 |
|
33 |
|
32 |
|
31 |
|
30 |
|
29 |
|
28 |
|
27 |
|
26 |
|
25 |
|
24 |
|
23 |
|
22 |
|
21 |
|
20 |
|
19 |
|
Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 2.017 | 0.205 |
| Mean | Stdev |
1_H21-36_O2-1 | 1.925 | 0.228 |
| Mean | Stdev |
1_O6-36_H41-1 | 2.059 | 0.508 |
| Mean | Stdev |
10_H1-27_N3-10 | 1.964 | 0.090 |
| Mean | Stdev |
10_H21-27_O2-10 | 1.901 | 0.125 |
| Mean | Stdev |
10_O6-27_H41-10 | 1.987 | 0.167 |
| Mean | Stdev |
11_H41-26_O6-11 | 1.990 | 0.168 |
| Mean | Stdev |
11_N3-26_H1-11 | 1.967 | 0.093 |
| Mean | Stdev |
11_O2-26_H21-11 | 1.906 | 0.126 |
| Mean | Stdev |
12_H3-25_N1-12 | 1.958 | 0.113 |
| Mean | Stdev |
12_O4-25_H61-12 | 2.037 | 0.223 |
| Mean | Stdev |
13_H61-24_O4-13 | 2.034 | 0.227 |
| Mean | Stdev |
13_N1-24_H3-13 | 1.963 | 0.119 |
| Mean | Stdev |
14_H1-23_N3-14 | 1.968 | 0.093 |
| Mean | Stdev |
14_H21-23_O2-14 | 1.905 | 0.126 |
| Mean | Stdev |
14_O6-23_H41-14 | 1.989 | 0.169 |
| Mean | Stdev |
15_H41-22_O6-15 | 1.983 | 0.165 |
| Mean | Stdev |
15_N3-22_H1-15 | 1.964 | 0.091 |
| Mean | Stdev |
15_O2-22_H21-15 | 1.905 | 0.129 |
| Mean | Stdev |
16_H3-21_N1-16 | 1.952 | 0.109 |
| Mean | Stdev |
16_O4-21_H61-16 | 2.011 | 0.192 |
| Mean | Stdev |
17_H1-20_N3-17 | 1.973 | 0.092 |
| Mean | Stdev |
17_H21-20_O2-17 | 1.903 | 0.128 |
| Mean | Stdev |
17_O6-20_H41-17 | 1.955 | 0.149 |
| Mean | Stdev |
18_H41-19_O6-18 | 1.980 | 0.204 |
| Mean | Stdev |
18_N3-19_H1-18 | 2.002 | 0.128 |
| Mean | Stdev |
18_O2-19_H21-18 | 1.928 | 0.167 |
| Mean | Stdev |
2_H41-35_O6-2 | 1.947 | 0.151 |
| Mean | Stdev |
2_N3-35_H1-2 | 1.957 | 0.091 |
| Mean | Stdev |
2_O2-35_H21-2 | 1.893 | 0.119 |
| Mean | Stdev |
3_H41-34_O6-3 | 1.968 | 0.166 |
| Mean | Stdev |
3_N3-34_H1-3 | 1.955 | 0.090 |
| Mean | Stdev |
3_O2-34_H21-3 | 1.889 | 0.120 |
| Mean | Stdev |
4_H3-33_N1-4 | 1.970 | 0.122 |
| Mean | Stdev |
4_O4-33_H61-4 | 2.040 | 0.226 |
| Mean | Stdev |
5_H61-32_O4-5 | 2.044 | 0.241 |
| Mean | Stdev |
5_N1-32_H3-5 | 1.955 | 0.117 |
| Mean | Stdev |
6_H1-31_N3-6 | 1.962 | 0.091 |
| Mean | Stdev |
6_H21-31_O2-6 | 1.900 | 0.126 |
| Mean | Stdev |
6_O6-31_H41-6 | 1.983 | 0.166 |
| Mean | Stdev |
7_H41-30_O6-7 | 1.995 | 0.168 |
| Mean | Stdev |
7_N3-30_H1-7 | 1.969 | 0.093 |
| Mean | Stdev |
7_O2-30_H21-7 | 1.901 | 0.129 |
| Mean | Stdev |
8_H3-29_N1-8 | 1.960 | 0.117 |
| Mean | Stdev |
8_O4-29_H61-8 | 2.037 | 0.223 |
| Mean | Stdev |
9_H61-28_O4-9 | 2.023 | 0.221 |
| Mean | Stdev |
9_N1-28_H3-9 | 1.962 | 0.118 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 2.0592 | 0.5085 |
1 | H1-N3_1-36 | 2.0171 | 0.2054 |
1 | H21-O2_1-36 | 1.9252 | 0.2283 |
2 | H41-O6_2-35 | 1.9466 | 0.1508 |
2 | N3-H1_2-35 | 1.9567 | 0.0906 |
2 | O2-H21_2-35 | 1.8926 | 0.1192 |
3 | H41-O6_3-34 | 1.9680 | 0.1656 |
3 | N3-H1_3-34 | 1.9554 | 0.0896 |
3 | O2-H21_3-34 | 1.8893 | 0.1198 |
4 | H3-N1_4-33 | 1.9695 | 0.1220 |
4 | O4-H61_4-33 | 2.0399 | 0.2255 |
5 | N1-H3_5-32 | 1.9551 | 0.1166 |
5 | H61-O4_5-32 | 2.0442 | 0.2408 |
6 | O6-H41_6-31 | 1.9832 | 0.1662 |
6 | H1-N3_6-31 | 1.9615 | 0.0914 |
6 | H21-O2_6-31 | 1.8996 | 0.1258 |
7 | H41-O6_7-30 | 1.9950 | 0.1681 |
7 | N3-H1_7-30 | 1.9689 | 0.0926 |
7 | O2-H21_7-30 | 1.9010 | 0.1287 |
8 | H3-N1_8-29 | 1.9605 | 0.1168 |
8 | O4-H61_8-29 | 2.0366 | 0.2229 |
9 | N1-H3_9-28 | 1.9624 | 0.1177 |
9 | H61-O4_9-28 | 2.0235 | 0.2206 |
10 | O6-H41_10-27 | 1.9870 | 0.1669 |
10 | H1-N3_10-27 | 1.9639 | 0.0899 |
10 | H21-O2_10-27 | 1.9015 | 0.1246 |
11 | H41-O6_11-26 | 1.9901 | 0.1684 |
11 | N3-H1_11-26 | 1.9668 | 0.0926 |
11 | O2-H21_11-26 | 1.9062 | 0.1263 |
12 | H3-N1_12-25 | 1.9578 | 0.1128 |
12 | O4-H61_12-25 | 2.0366 | 0.2227 |
13 | N1-H3_13-24 | 1.9628 | 0.1189 |
13 | H61-O4_13-24 | 2.0344 | 0.2268 |
14 | O6-H41_14-23 | 1.9889 | 0.1686 |
14 | H1-N3_14-23 | 1.9678 | 0.0929 |
14 | H21-O2_14-23 | 1.9052 | 0.1262 |
15 | H41-O6_15-22 | 1.9826 | 0.1652 |
15 | N3-H1_15-22 | 1.9638 | 0.0911 |
15 | O2-H21_15-22 | 1.9045 | 0.1292 |
16 | H3-N1_16-21 | 1.9522 | 0.1093 |
16 | O4-H61_16-21 | 2.0107 | 0.1916 |
17 | O6-H41_17-20 | 1.9551 | 0.1495 |
17 | H1-N3_17-20 | 1.9729 | 0.0921 |
17 | H21-O2_17-20 | 1.9027 | 0.1284 |
18 | H41-O6_18-19 | 1.9796 | 0.2037 |
18 | N3-H1_18-19 | 2.0021 | 0.1277 |
18 | O2-H21_18-19 | 1.9282 | 0.1667 |