Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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5' |
C |
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G |
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G |
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A |
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G |
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C |
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C |
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T |
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A |
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G |
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G |
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C |
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T |
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C |
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G |
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C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
G |
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C |
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C |
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T |
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C |
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G |
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G |
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A |
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T |
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C |
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C |
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G |
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A |
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G |
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C |
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G |
5' |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H41-32_O6-1 | 2.493 | 1.712 |
| Mean | Stdev |
1_N3-32_H1-1 | 2.407 | 1.502 |
| Mean | Stdev |
1_O2-32_H21-1 | 2.327 | 1.474 |
| Mean | Stdev |
10_H1-23_N3-10 | 1.968 | 0.093 |
| Mean | Stdev |
10_H21-23_O2-10 | 1.896 | 0.126 |
| Mean | Stdev |
10_O6-23_H41-10 | 1.996 | 0.172 |
| Mean | Stdev |
11_H1-22_N3-11 | 1.962 | 0.094 |
| Mean | Stdev |
11_H21-22_O2-11 | 1.911 | 0.129 |
| Mean | Stdev |
11_O6-22_H41-11 | 1.960 | 0.163 |
| Mean | Stdev |
12_H41-21_O6-12 | 1.983 | 0.174 |
| Mean | Stdev |
12_N3-21_H1-12 | 1.961 | 0.092 |
| Mean | Stdev |
12_O2-21_H21-12 | 1.901 | 0.124 |
| Mean | Stdev |
13_H3-20_N1-13 | 1.982 | 0.120 |
| Mean | Stdev |
13_O4-20_H61-13 | 1.984 | 0.175 |
| Mean | Stdev |
14_H41-19_O6-14 | 1.967 | 0.163 |
| Mean | Stdev |
14_N3-19_H1-14 | 1.967 | 0.092 |
| Mean | Stdev |
14_O2-19_H21-14 | 1.889 | 0.122 |
| Mean | Stdev |
15_H1-18_N3-15 | 1.973 | 0.092 |
| Mean | Stdev |
15_H21-18_O2-15 | 1.901 | 0.127 |
| Mean | Stdev |
15_O6-18_H41-15 | 1.950 | 0.153 |
| Mean | Stdev |
16_H41-17_O6-16 | 2.003 | 0.389 |
| Mean | Stdev |
16_N3-17_H1-16 | 2.022 | 0.336 |
| Mean | Stdev |
16_O2-17_H21-16 | 1.944 | 0.393 |
| Mean | Stdev |
2_H1-31_N3-2 | 1.960 | 0.089 |
| Mean | Stdev |
2_H21-31_O2-2 | 1.890 | 0.125 |
| Mean | Stdev |
2_O6-31_H41-2 | 1.951 | 0.150 |
| Mean | Stdev |
3_H1-30_N3-3 | 1.975 | 0.093 |
| Mean | Stdev |
3_H21-30_O2-3 | 1.917 | 0.136 |
| Mean | Stdev |
3_O6-30_H41-3 | 1.962 | 0.156 |
| Mean | Stdev |
4_H61-29_O4-4 | 1.998 | 0.185 |
| Mean | Stdev |
4_N1-29_H3-4 | 1.967 | 0.116 |
| Mean | Stdev |
5_H1-28_N3-5 | 1.961 | 0.091 |
| Mean | Stdev |
5_H21-28_O2-5 | 1.897 | 0.125 |
| Mean | Stdev |
5_O6-28_H41-5 | 1.975 | 0.160 |
| Mean | Stdev |
6_H41-27_O6-6 | 1.955 | 0.155 |
| Mean | Stdev |
6_N3-27_H1-6 | 1.959 | 0.091 |
| Mean | Stdev |
6_O2-27_H21-6 | 1.906 | 0.129 |
| Mean | Stdev |
7_H41-26_O6-7 | 1.989 | 0.171 |
| Mean | Stdev |
7_N3-26_H1-7 | 1.963 | 0.091 |
| Mean | Stdev |
7_O2-26_H21-7 | 1.892 | 0.123 |
| Mean | Stdev |
8_H3-25_N1-8 | 1.973 | 0.126 |
| Mean | Stdev |
8_O4-25_H61-8 | 2.014 | 0.212 |
| Mean | Stdev |
9_H61-24_O4-9 | 2.023 | 0.214 |
| Mean | Stdev |
9_N1-24_H3-9 | 1.970 | 0.121 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | H41-O6_1-32 | 2.4931 | 1.7117 |
1 | N3-H1_1-32 | 2.4070 | 1.5024 |
1 | O2-H21_1-32 | 2.3266 | 1.4742 |
2 | O6-H41_2-31 | 1.9513 | 0.1499 |
2 | H1-N3_2-31 | 1.9601 | 0.0894 |
2 | H21-O2_2-31 | 1.8902 | 0.1254 |
3 | O6-H41_3-30 | 1.9620 | 0.1564 |
3 | H1-N3_3-30 | 1.9746 | 0.0929 |
3 | H21-O2_3-30 | 1.9171 | 0.1358 |
4 | N1-H3_4-29 | 1.9673 | 0.1158 |
4 | H61-O4_4-29 | 1.9978 | 0.1853 |
5 | O6-H41_5-28 | 1.9747 | 0.1597 |
5 | H1-N3_5-28 | 1.9606 | 0.0909 |
5 | H21-O2_5-28 | 1.8973 | 0.1246 |
6 | H41-O6_6-27 | 1.9550 | 0.1546 |
6 | N3-H1_6-27 | 1.9593 | 0.0910 |
6 | O2-H21_6-27 | 1.9058 | 0.1285 |
7 | H41-O6_7-26 | 1.9891 | 0.1708 |
7 | N3-H1_7-26 | 1.9634 | 0.0907 |
7 | O2-H21_7-26 | 1.8924 | 0.1232 |
8 | H3-N1_8-25 | 1.9733 | 0.1260 |
8 | O4-H61_8-25 | 2.0138 | 0.2123 |
9 | N1-H3_9-24 | 1.9705 | 0.1215 |
9 | H61-O4_9-24 | 2.0235 | 0.2139 |
10 | O6-H41_10-23 | 1.9959 | 0.1716 |
10 | H1-N3_10-23 | 1.9677 | 0.0935 |
10 | H21-O2_10-23 | 1.8961 | 0.1255 |
11 | O6-H41_11-22 | 1.9602 | 0.1625 |
11 | H1-N3_11-22 | 1.9617 | 0.0941 |
11 | H21-O2_11-22 | 1.9107 | 0.1291 |
12 | H41-O6_12-21 | 1.9833 | 0.1739 |
12 | N3-H1_12-21 | 1.9606 | 0.0925 |
12 | O2-H21_12-21 | 1.9010 | 0.1237 |
13 | H3-N1_13-20 | 1.9819 | 0.1205 |
13 | O4-H61_13-20 | 1.9842 | 0.1753 |
14 | H41-O6_14-19 | 1.9667 | 0.1629 |
14 | N3-H1_14-19 | 1.9674 | 0.0925 |
14 | O2-H21_14-19 | 1.8886 | 0.1224 |
15 | O6-H41_15-18 | 1.9498 | 0.1530 |
15 | H1-N3_15-18 | 1.9734 | 0.0921 |
15 | H21-O2_15-18 | 1.9012 | 0.1272 |
16 | H41-O6_16-17 | 2.0033 | 0.3885 |
16 | N3-H1_16-17 | 2.0220 | 0.3362 |
16 | O2-H21_16-17 | 1.9443 | 0.3929 |