Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
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C |
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U |
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G |
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G |
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C |
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A |
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U |
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G |
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A |
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A |
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G |
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C |
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G |
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A |
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C |
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G |
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C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
C |
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G |
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A |
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C |
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C |
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G |
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U |
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A |
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C |
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U |
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U |
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C |
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G |
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C |
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U |
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G |
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C |
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G |
5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 2.014 | 0.182 |
| Mean | Stdev |
1_H21-36_O2-1 | 1.938 | 0.223 |
| Mean | Stdev |
1_O6-36_H41-1 | 2.028 | 0.280 |
| Mean | Stdev |
10_H61-27_O4-10 | 2.040 | 0.227 |
| Mean | Stdev |
10_N1-27_H3-10 | 2.014 | 0.144 |
| Mean | Stdev |
11_H61-26_O4-11 | 2.037 | 0.247 |
| Mean | Stdev |
11_N1-26_H3-11 | 1.987 | 0.135 |
| Mean | Stdev |
12_H1-25_N3-12 | 1.979 | 0.107 |
| Mean | Stdev |
12_H21-25_O2-12 | 1.890 | 0.123 |
| Mean | Stdev |
12_O6-25_H41-12 | 1.996 | 0.209 |
| Mean | Stdev |
13_H41-24_O6-13 | 1.993 | 0.237 |
| Mean | Stdev |
13_N3-24_H1-13 | 1.975 | 0.124 |
| Mean | Stdev |
13_O2-24_H21-13 | 1.897 | 0.131 |
| Mean | Stdev |
14_H1-23_N3-14 | 1.979 | 0.129 |
| Mean | Stdev |
14_H21-23_O2-14 | 1.913 | 0.139 |
| Mean | Stdev |
14_O6-23_H41-14 | 2.002 | 0.249 |
| Mean | Stdev |
15_H61-22_O4-15 | 2.123 | 0.363 |
| Mean | Stdev |
15_N1-22_H3-15 | 2.011 | 0.252 |
| Mean | Stdev |
16_H41-21_O6-16 | 2.032 | 0.260 |
| Mean | Stdev |
16_N3-21_H1-16 | 1.976 | 0.124 |
| Mean | Stdev |
16_O2-21_H21-16 | 1.889 | 0.125 |
| Mean | Stdev |
17_H1-20_N3-17 | 1.976 | 0.134 |
| Mean | Stdev |
17_H21-20_O2-17 | 1.885 | 0.124 |
| Mean | Stdev |
17_O6-20_H41-17 | 2.008 | 0.268 |
| Mean | Stdev |
18_H41-19_O6-18 | 2.011 | 0.279 |
| Mean | Stdev |
18_N3-19_H1-18 | 2.027 | 0.237 |
| Mean | Stdev |
18_O2-19_H21-18 | 1.964 | 0.321 |
| Mean | Stdev |
2_H41-35_O6-2 | 1.985 | 0.192 |
| Mean | Stdev |
2_N3-35_H1-2 | 1.977 | 0.106 |
| Mean | Stdev |
2_O2-35_H21-2 | 1.894 | 0.127 |
| Mean | Stdev |
3_H3-34_N1-3 | 1.977 | 0.131 |
| Mean | Stdev |
3_O4-34_H61-3 | 2.068 | 0.262 |
| Mean | Stdev |
4_H1-33_N3-4 | 1.957 | 0.091 |
| Mean | Stdev |
4_H21-33_O2-4 | 1.906 | 0.131 |
| Mean | Stdev |
4_O6-33_H41-4 | 1.950 | 0.156 |
| Mean | Stdev |
5_H1-32_N3-5 | 1.975 | 0.097 |
| Mean | Stdev |
5_H21-32_O2-5 | 1.901 | 0.125 |
| Mean | Stdev |
5_O6-32_H41-5 | 1.983 | 0.171 |
| Mean | Stdev |
6_H41-31_O6-6 | 1.978 | 0.173 |
| Mean | Stdev |
6_N3-31_H1-6 | 1.964 | 0.098 |
| Mean | Stdev |
6_O2-31_H21-6 | 1.888 | 0.122 |
| Mean | Stdev |
7_H61-30_O4-7 | 2.077 | 0.265 |
| Mean | Stdev |
7_N1-30_H3-7 | 1.995 | 0.144 |
| Mean | Stdev |
8_H3-29_N1-8 | 1.991 | 0.161 |
| Mean | Stdev |
8_O4-29_H61-8 | 2.073 | 0.278 |
| Mean | Stdev |
9_H1-28_N3-9 | 1.966 | 0.092 |
| Mean | Stdev |
9_H21-28_O2-9 | 1.914 | 0.132 |
| Mean | Stdev |
9_O6-28_H41-9 | 1.964 | 0.155 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 2.0278 | 0.2802 |
1 | H1-N3_1-36 | 2.0144 | 0.1822 |
1 | H21-O2_1-36 | 1.9377 | 0.2232 |
2 | H41-O6_2-35 | 1.9848 | 0.1920 |
2 | N3-H1_2-35 | 1.9768 | 0.1062 |
2 | O2-H21_2-35 | 1.8938 | 0.1274 |
3 | H3-N1_3-34 | 1.9771 | 0.1311 |
3 | O4-H61_3-34 | 2.0677 | 0.2615 |
4 | O6-H41_4-33 | 1.9497 | 0.1562 |
4 | H1-N3_4-33 | 1.9566 | 0.0914 |
4 | H21-O2_4-33 | 1.9059 | 0.1312 |
5 | O6-H41_5-32 | 1.9829 | 0.1712 |
5 | H1-N3_5-32 | 1.9751 | 0.0973 |
5 | H21-O2_5-32 | 1.9013 | 0.1252 |
6 | H41-O6_6-31 | 1.9779 | 0.1728 |
6 | N3-H1_6-31 | 1.9637 | 0.0982 |
6 | O2-H21_6-31 | 1.8879 | 0.1225 |
7 | N1-H3_7-30 | 1.9947 | 0.1444 |
7 | H61-O4_7-30 | 2.0768 | 0.2654 |
8 | H3-N1_8-29 | 1.9910 | 0.1611 |
8 | O4-H61_8-29 | 2.0731 | 0.2783 |
9 | O6-H41_9-28 | 1.9642 | 0.1552 |
9 | H1-N3_9-28 | 1.9665 | 0.0924 |
9 | H21-O2_9-28 | 1.9144 | 0.1320 |
10 | N1-H3_10-27 | 2.0140 | 0.1439 |
10 | H61-O4_10-27 | 2.0396 | 0.2270 |
11 | N1-H3_11-26 | 1.9874 | 0.1346 |
11 | H61-O4_11-26 | 2.0370 | 0.2472 |
12 | O6-H41_12-25 | 1.9965 | 0.2095 |
12 | H1-N3_12-25 | 1.9792 | 0.1071 |
12 | H21-O2_12-25 | 1.8900 | 0.1229 |
13 | H41-O6_13-24 | 1.9931 | 0.2374 |
13 | N3-H1_13-24 | 1.9746 | 0.1241 |
13 | O2-H21_13-24 | 1.8971 | 0.1308 |
14 | O6-H41_14-23 | 2.0017 | 0.2487 |
14 | H1-N3_14-23 | 1.9791 | 0.1293 |
14 | H21-O2_14-23 | 1.9133 | 0.1386 |
15 | N1-H3_15-22 | 2.0115 | 0.2522 |
15 | H61-O4_15-22 | 2.1229 | 0.3632 |
16 | H41-O6_16-21 | 2.0317 | 0.2601 |
16 | N3-H1_16-21 | 1.9759 | 0.1238 |
16 | O2-H21_16-21 | 1.8894 | 0.1248 |
17 | O6-H41_17-20 | 2.0079 | 0.2678 |
17 | H1-N3_17-20 | 1.9764 | 0.1341 |
17 | H21-O2_17-20 | 1.8848 | 0.1239 |
18 | H41-O6_18-19 | 2.0109 | 0.2785 |
18 | N3-H1_18-19 | 2.0266 | 0.2366 |
18 | O2-H21_18-19 | 1.9636 | 0.3207 |