Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
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C |
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G |
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A |
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A |
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C |
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U |
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C |
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A |
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A |
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A |
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G |
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G |
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U |
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U |
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G |
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G |
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C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
C |
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G |
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C |
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U |
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U |
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G |
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A |
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G |
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U |
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U |
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U |
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C |
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C |
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A |
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A |
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C |
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C |
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G |
5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 3.744 | 2.050 |
| Mean | Stdev |
1_H21-36_O2-1 | 5.488 | 3.696 |
| Mean | Stdev |
1_O6-36_H41-1 | 3.119 | 2.353 |
| Mean | Stdev |
10_H61-27_O4-10 | 2.011 | 0.203 |
| Mean | Stdev |
10_N1-27_H3-10 | 2.028 | 0.157 |
| Mean | Stdev |
11_H61-26_O4-11 | 2.118 | 0.544 |
| Mean | Stdev |
11_N1-26_H3-11 | 2.062 | 0.497 |
| Mean | Stdev |
12_H1-25_N3-12 | 1.963 | 0.093 |
| Mean | Stdev |
12_H21-25_O2-12 | 1.887 | 0.121 |
| Mean | Stdev |
12_O6-25_H41-12 | 1.958 | 0.161 |
| Mean | Stdev |
13_H1-24_N3-13 | 1.966 | 0.098 |
| Mean | Stdev |
13_H21-24_O2-13 | 1.886 | 0.121 |
| Mean | Stdev |
13_O6-24_H41-13 | 1.992 | 0.174 |
| Mean | Stdev |
14_H3-23_N1-14 | 1.996 | 0.161 |
| Mean | Stdev |
14_O4-23_H61-14 | 2.050 | 0.280 |
| Mean | Stdev |
15_H3-22_N1-15 | 2.005 | 0.135 |
| Mean | Stdev |
15_O4-22_H61-15 | 2.049 | 0.225 |
| Mean | Stdev |
16_H1-21_N3-16 | 1.962 | 0.095 |
| Mean | Stdev |
16_H21-21_O2-16 | 1.901 | 0.126 |
| Mean | Stdev |
16_O6-21_H41-16 | 1.954 | 0.163 |
| Mean | Stdev |
17_H1-20_N3-17 | 1.966 | 0.102 |
| Mean | Stdev |
17_H21-20_O2-17 | 1.877 | 0.118 |
| Mean | Stdev |
17_O6-20_H41-17 | 1.984 | 0.186 |
| Mean | Stdev |
18_H41-19_O6-18 | 2.008 | 0.237 |
| Mean | Stdev |
18_N3-19_H1-18 | 2.016 | 0.151 |
| Mean | Stdev |
18_O2-19_H21-18 | 1.944 | 0.210 |
| Mean | Stdev |
2_H41-35_O6-2 | 2.042 | 0.389 |
| Mean | Stdev |
2_N3-35_H1-2 | 1.989 | 0.222 |
| Mean | Stdev |
2_O2-35_H21-2 | 1.925 | 0.187 |
| Mean | Stdev |
3_H1-34_N3-3 | 1.975 | 0.102 |
| Mean | Stdev |
3_H21-34_O2-3 | 1.914 | 0.134 |
| Mean | Stdev |
3_O6-34_H41-3 | 1.981 | 0.184 |
| Mean | Stdev |
4_H61-33_O4-4 | 2.060 | 0.234 |
| Mean | Stdev |
4_N1-33_H3-4 | 2.011 | 0.140 |
| Mean | Stdev |
5_H61-32_O4-5 | 2.067 | 0.268 |
| Mean | Stdev |
5_N1-32_H3-5 | 1.999 | 0.143 |
| Mean | Stdev |
6_H41-31_O6-6 | 2.007 | 0.223 |
| Mean | Stdev |
6_N3-31_H1-6 | 1.968 | 0.114 |
| Mean | Stdev |
6_O2-31_H21-6 | 1.883 | 0.120 |
| Mean | Stdev |
7_H3-30_N1-7 | 1.982 | 0.128 |
| Mean | Stdev |
7_O4-30_H61-7 | 2.067 | 0.271 |
| Mean | Stdev |
8_H41-29_O6-8 | 1.961 | 0.154 |
| Mean | Stdev |
8_N3-29_H1-8 | 1.965 | 0.092 |
| Mean | Stdev |
8_O2-29_H21-8 | 1.917 | 0.133 |
| Mean | Stdev |
9_H61-28_O4-9 | 2.016 | 0.221 |
| Mean | Stdev |
9_N1-28_H3-9 | 2.016 | 0.155 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 3.1185 | 2.3534 |
1 | H1-N3_1-36 | 3.7442 | 2.0505 |
1 | H21-O2_1-36 | 5.4881 | 3.6961 |
2 | H41-O6_2-35 | 2.0415 | 0.3889 |
2 | N3-H1_2-35 | 1.9891 | 0.2221 |
2 | O2-H21_2-35 | 1.9249 | 0.1866 |
3 | O6-H41_3-34 | 1.9808 | 0.1844 |
3 | H1-N3_3-34 | 1.9749 | 0.1017 |
3 | H21-O2_3-34 | 1.9138 | 0.1339 |
4 | N1-H3_4-33 | 2.0106 | 0.1399 |
4 | H61-O4_4-33 | 2.0602 | 0.2342 |
5 | N1-H3_5-32 | 1.9990 | 0.1428 |
5 | H61-O4_5-32 | 2.0673 | 0.2675 |
6 | H41-O6_6-31 | 2.0068 | 0.2231 |
6 | N3-H1_6-31 | 1.9684 | 0.1140 |
6 | O2-H21_6-31 | 1.8827 | 0.1205 |
7 | H3-N1_7-30 | 1.9819 | 0.1278 |
7 | O4-H61_7-30 | 2.0667 | 0.2708 |
8 | H41-O6_8-29 | 1.9609 | 0.1539 |
8 | N3-H1_8-29 | 1.9653 | 0.0921 |
8 | O2-H21_8-29 | 1.9173 | 0.1328 |
9 | N1-H3_9-28 | 2.0164 | 0.1550 |
9 | H61-O4_9-28 | 2.0160 | 0.2210 |
10 | N1-H3_10-27 | 2.0276 | 0.1565 |
10 | H61-O4_10-27 | 2.0113 | 0.2029 |
11 | N1-H3_11-26 | 2.0622 | 0.4973 |
11 | H61-O4_11-26 | 2.1176 | 0.5445 |
12 | O6-H41_12-25 | 1.9584 | 0.1605 |
12 | H1-N3_12-25 | 1.9631 | 0.0931 |
12 | H21-O2_12-25 | 1.8872 | 0.1209 |
13 | O6-H41_13-24 | 1.9920 | 0.1738 |
13 | H1-N3_13-24 | 1.9655 | 0.0980 |
13 | H21-O2_13-24 | 1.8863 | 0.1212 |
14 | H3-N1_14-23 | 1.9956 | 0.1610 |
14 | O4-H61_14-23 | 2.0495 | 0.2803 |
15 | H3-N1_15-22 | 2.0050 | 0.1350 |
15 | O4-H61_15-22 | 2.0493 | 0.2250 |
16 | O6-H41_16-21 | 1.9539 | 0.1631 |
16 | H1-N3_16-21 | 1.9617 | 0.0947 |
16 | H21-O2_16-21 | 1.9008 | 0.1257 |
17 | O6-H41_17-20 | 1.9844 | 0.1859 |
17 | H1-N3_17-20 | 1.9662 | 0.1019 |
17 | H21-O2_17-20 | 1.8775 | 0.1183 |
18 | H41-O6_18-19 | 2.0084 | 0.2371 |
18 | N3-H1_18-19 | 2.0159 | 0.1513 |
18 | O2-H21_18-19 | 1.9439 | 0.2096 |