Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
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C |
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G |
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A |
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C |
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C |
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G |
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A |
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A |
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U |
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G |
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U |
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A |
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A |
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U |
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U |
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G |
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C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
C |
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G |
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C |
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U |
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G |
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G |
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C |
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U |
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U |
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A |
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C |
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A |
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U |
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U |
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A |
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A |
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C |
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G |
5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 2.018 | 0.180 |
| Mean | Stdev |
1_H21-36_O2-1 | 1.948 | 0.251 |
| Mean | Stdev |
1_O6-36_H41-1 | 2.014 | 0.244 |
| Mean | Stdev |
10_H3-27_N1-10 | 1.988 | 0.139 |
| Mean | Stdev |
10_O4-27_H61-10 | 2.082 | 0.264 |
| Mean | Stdev |
11_H1-26_N3-11 | 1.965 | 0.102 |
| Mean | Stdev |
11_H21-26_O2-11 | 1.900 | 0.130 |
| Mean | Stdev |
11_O6-26_H41-11 | 1.994 | 0.185 |
| Mean | Stdev |
12_H3-25_N1-12 | 1.983 | 0.123 |
| Mean | Stdev |
12_O4-25_H61-12 | 2.071 | 0.241 |
| Mean | Stdev |
13_H61-24_O4-13 | 2.056 | 0.226 |
| Mean | Stdev |
13_N1-24_H3-13 | 1.997 | 0.132 |
| Mean | Stdev |
14_H61-23_O4-14 | 2.067 | 0.255 |
| Mean | Stdev |
14_N1-23_H3-14 | 2.006 | 0.155 |
| Mean | Stdev |
15_H3-22_N1-15 | 2.009 | 0.160 |
| Mean | Stdev |
15_O4-22_H61-15 | 2.058 | 0.248 |
| Mean | Stdev |
16_H3-21_N1-16 | 2.007 | 0.146 |
| Mean | Stdev |
16_O4-21_H61-16 | 2.038 | 0.241 |
| Mean | Stdev |
17_H1-20_N3-17 | 1.964 | 0.112 |
| Mean | Stdev |
17_H21-20_O2-17 | 1.886 | 0.123 |
| Mean | Stdev |
17_O6-20_H41-17 | 1.979 | 0.210 |
| Mean | Stdev |
18_H41-19_O6-18 | 2.010 | 0.233 |
| Mean | Stdev |
18_N3-19_H1-18 | 2.021 | 0.167 |
| Mean | Stdev |
18_O2-19_H21-18 | 1.949 | 0.232 |
| Mean | Stdev |
2_H41-35_O6-2 | 2.010 | 0.279 |
| Mean | Stdev |
2_N3-35_H1-2 | 1.979 | 0.141 |
| Mean | Stdev |
2_O2-35_H21-2 | 1.887 | 0.130 |
| Mean | Stdev |
3_H1-34_N3-3 | 1.986 | 0.142 |
| Mean | Stdev |
3_H21-34_O2-3 | 1.910 | 0.135 |
| Mean | Stdev |
3_O6-34_H41-3 | 2.017 | 0.283 |
| Mean | Stdev |
4_H61-33_O4-4 | 2.170 | 0.574 |
| Mean | Stdev |
4_N1-33_H3-4 | 2.075 | 0.519 |
| Mean | Stdev |
5_H41-32_O6-5 | 2.002 | 0.197 |
| Mean | Stdev |
5_N3-32_H1-5 | 1.970 | 0.104 |
| Mean | Stdev |
5_O2-32_H21-5 | 1.887 | 0.123 |
| Mean | Stdev |
6_H41-31_O6-6 | 1.953 | 0.200 |
| Mean | Stdev |
6_N3-31_H1-6 | 1.967 | 0.112 |
| Mean | Stdev |
6_O2-31_H21-6 | 1.906 | 0.132 |
| Mean | Stdev |
7_H1-30_N3-7 | 1.978 | 0.114 |
| Mean | Stdev |
7_H21-30_O2-7 | 1.910 | 0.134 |
| Mean | Stdev |
7_O6-30_H41-7 | 1.999 | 0.219 |
| Mean | Stdev |
8_H61-29_O4-8 | 2.049 | 0.234 |
| Mean | Stdev |
8_N1-29_H3-8 | 2.007 | 0.141 |
| Mean | Stdev |
9_H61-28_O4-9 | 2.101 | 0.425 |
| Mean | Stdev |
9_N1-28_H3-9 | 2.041 | 0.366 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 2.0139 | 0.2438 |
1 | H1-N3_1-36 | 2.0180 | 0.1799 |
1 | H21-O2_1-36 | 1.9482 | 0.2509 |
2 | H41-O6_2-35 | 2.0097 | 0.2790 |
2 | N3-H1_2-35 | 1.9787 | 0.1411 |
2 | O2-H21_2-35 | 1.8874 | 0.1295 |
3 | O6-H41_3-34 | 2.0171 | 0.2833 |
3 | H1-N3_3-34 | 1.9863 | 0.1423 |
3 | H21-O2_3-34 | 1.9098 | 0.1352 |
4 | N1-H3_4-33 | 2.0749 | 0.5194 |
4 | H61-O4_4-33 | 2.1698 | 0.5742 |
5 | H41-O6_5-32 | 2.0017 | 0.1972 |
5 | N3-H1_5-32 | 1.9702 | 0.1042 |
5 | O2-H21_5-32 | 1.8867 | 0.1229 |
6 | H41-O6_6-31 | 1.9527 | 0.2000 |
6 | N3-H1_6-31 | 1.9670 | 0.1122 |
6 | O2-H21_6-31 | 1.9061 | 0.1320 |
7 | O6-H41_7-30 | 1.9991 | 0.2191 |
7 | H1-N3_7-30 | 1.9783 | 0.1136 |
7 | H21-O2_7-30 | 1.9104 | 0.1340 |
8 | N1-H3_8-29 | 2.0070 | 0.1410 |
8 | H61-O4_8-29 | 2.0493 | 0.2336 |
9 | N1-H3_9-28 | 2.0411 | 0.3659 |
9 | H61-O4_9-28 | 2.1007 | 0.4254 |
10 | H3-N1_10-27 | 1.9884 | 0.1389 |
10 | O4-H61_10-27 | 2.0821 | 0.2636 |
11 | O6-H41_11-26 | 1.9939 | 0.1850 |
11 | H1-N3_11-26 | 1.9649 | 0.1023 |
11 | H21-O2_11-26 | 1.9002 | 0.1300 |
12 | H3-N1_12-25 | 1.9826 | 0.1235 |
12 | O4-H61_12-25 | 2.0707 | 0.2412 |
13 | N1-H3_13-24 | 1.9973 | 0.1317 |
13 | H61-O4_13-24 | 2.0559 | 0.2258 |
14 | N1-H3_14-23 | 2.0063 | 0.1546 |
14 | H61-O4_14-23 | 2.0669 | 0.2548 |
15 | H3-N1_15-22 | 2.0086 | 0.1601 |
15 | O4-H61_15-22 | 2.0585 | 0.2482 |
16 | H3-N1_16-21 | 2.0067 | 0.1464 |
16 | O4-H61_16-21 | 2.0380 | 0.2409 |
17 | O6-H41_17-20 | 1.9788 | 0.2100 |
17 | H1-N3_17-20 | 1.9642 | 0.1120 |
17 | H21-O2_17-20 | 1.8861 | 0.1232 |
18 | H41-O6_18-19 | 2.0103 | 0.2333 |
18 | N3-H1_18-19 | 2.0206 | 0.1669 |
18 | O2-H21_18-19 | 1.9490 | 0.2323 |