Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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8 |
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9 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
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C |
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A |
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C |
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G |
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C |
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G |
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G |
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C |
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G |
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A |
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G |
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A |
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G |
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C |
3' |
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3' |
C |
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G |
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A |
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T |
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G |
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C |
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G |
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C |
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5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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21 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 2.000 | 0.120 |
| Mean | Stdev |
1_H21-36_O2-1 | 1.923 | 0.152 |
| Mean | Stdev |
1_O6-36_H41-1 | 2.005 | 0.303 |
| Mean | Stdev |
10_H61-27_O4-10 | 1.998 | 0.177 |
| Mean | Stdev |
10_N1-27_H3-10 | 1.984 | 0.120 |
| Mean | Stdev |
11_H3-26_N1-11 | 2.002 | 0.125 |
| Mean | Stdev |
11_O4-26_H61-11 | 1.984 | 0.174 |
| Mean | Stdev |
12_H41-25_O6-12 | 1.966 | 0.188 |
| Mean | Stdev |
12_N3-25_H1-12 | 1.968 | 0.102 |
| Mean | Stdev |
12_O2-25_H21-12 | 1.897 | 0.128 |
| Mean | Stdev |
13_H1-24_N3-13 | 1.970 | 0.095 |
| Mean | Stdev |
13_H21-24_O2-13 | 1.889 | 0.120 |
| Mean | Stdev |
13_O6-24_H41-13 | 1.957 | 0.158 |
| Mean | Stdev |
14_H61-23_O4-14 | 1.970 | 0.174 |
| Mean | Stdev |
14_N1-23_H3-14 | 1.996 | 0.130 |
| Mean | Stdev |
15_H1-22_N3-15 | 1.965 | 0.095 |
| Mean | Stdev |
15_H21-22_O2-15 | 1.914 | 0.134 |
| Mean | Stdev |
15_O6-22_H41-15 | 1.977 | 0.164 |
| Mean | Stdev |
16_H61-21_O4-16 | 2.001 | 0.197 |
| Mean | Stdev |
16_N1-21_H3-16 | 1.974 | 0.120 |
| Mean | Stdev |
17_H1-20_N3-17 | 1.963 | 0.092 |
| Mean | Stdev |
17_H21-20_O2-17 | 1.894 | 0.125 |
| Mean | Stdev |
17_O6-20_H41-17 | 1.968 | 0.159 |
| Mean | Stdev |
18_H41-19_O6-18 | 2.005 | 0.290 |
| Mean | Stdev |
18_N3-19_H1-18 | 2.005 | 0.145 |
| Mean | Stdev |
18_O2-19_H21-18 | 1.921 | 0.165 |
| Mean | Stdev |
2_H41-35_O6-2 | 1.988 | 0.168 |
| Mean | Stdev |
2_N3-35_H1-2 | 1.972 | 0.097 |
| Mean | Stdev |
2_O2-35_H21-2 | 1.897 | 0.128 |
| Mean | Stdev |
3_H3-34_N1-3 | 1.954 | 0.111 |
| Mean | Stdev |
3_O4-34_H61-3 | 2.055 | 0.238 |
| Mean | Stdev |
4_H61-33_O4-4 | 1.973 | 0.194 |
| Mean | Stdev |
4_N1-33_H3-4 | 2.003 | 0.144 |
| Mean | Stdev |
5_H41-32_O6-5 | 1.970 | 0.170 |
| Mean | Stdev |
5_N3-32_H1-5 | 1.976 | 0.101 |
| Mean | Stdev |
5_O2-32_H21-5 | 1.886 | 0.124 |
| Mean | Stdev |
6_H1-31_N3-6 | 1.967 | 0.093 |
| Mean | Stdev |
6_H21-31_O2-6 | 1.903 | 0.124 |
| Mean | Stdev |
6_O6-31_H41-6 | 1.946 | 0.153 |
| Mean | Stdev |
7_H41-30_O6-7 | 1.948 | 0.153 |
| Mean | Stdev |
7_N3-30_H1-7 | 1.969 | 0.093 |
| Mean | Stdev |
7_O2-30_H21-7 | 1.896 | 0.123 |
| Mean | Stdev |
8_H1-29_N3-8 | 1.960 | 0.090 |
| Mean | Stdev |
8_H21-29_O2-8 | 1.887 | 0.126 |
| Mean | Stdev |
8_O6-29_H41-8 | 1.960 | 0.156 |
| Mean | Stdev |
9_H1-28_N3-9 | 1.971 | 0.093 |
| Mean | Stdev |
9_H21-28_O2-9 | 1.936 | 0.146 |
| Mean | Stdev |
9_O6-28_H41-9 | 1.961 | 0.155 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 2.0046 | 0.3030 |
1 | H1-N3_1-36 | 1.9999 | 0.1205 |
1 | H21-O2_1-36 | 1.9235 | 0.1516 |
2 | H41-O6_2-35 | 1.9879 | 0.1680 |
2 | N3-H1_2-35 | 1.9718 | 0.0974 |
2 | O2-H21_2-35 | 1.8966 | 0.1277 |
3 | H3-N1_3-34 | 1.9536 | 0.1110 |
3 | O4-H61_3-34 | 2.0546 | 0.2382 |
4 | N1-H3_4-33 | 2.0026 | 0.1439 |
4 | H61-O4_4-33 | 1.9733 | 0.1944 |
5 | H41-O6_5-32 | 1.9705 | 0.1702 |
5 | N3-H1_5-32 | 1.9762 | 0.1006 |
5 | O2-H21_5-32 | 1.8862 | 0.1245 |
6 | O6-H41_6-31 | 1.9458 | 0.1530 |
6 | H1-N3_6-31 | 1.9669 | 0.0934 |
6 | H21-O2_6-31 | 1.9025 | 0.1243 |
7 | H41-O6_7-30 | 1.9480 | 0.1531 |
7 | N3-H1_7-30 | 1.9692 | 0.0931 |
7 | O2-H21_7-30 | 1.8961 | 0.1226 |
8 | O6-H41_8-29 | 1.9601 | 0.1556 |
8 | H1-N3_8-29 | 1.9603 | 0.0900 |
8 | H21-O2_8-29 | 1.8867 | 0.1256 |
9 | O6-H41_9-28 | 1.9609 | 0.1555 |
9 | H1-N3_9-28 | 1.9707 | 0.0926 |
9 | H21-O2_9-28 | 1.9364 | 0.1461 |
10 | N1-H3_10-27 | 1.9836 | 0.1199 |
10 | H61-O4_10-27 | 1.9979 | 0.1769 |
11 | H3-N1_11-26 | 2.0020 | 0.1248 |
11 | O4-H61_11-26 | 1.9838 | 0.1736 |
12 | H41-O6_12-25 | 1.9655 | 0.1877 |
12 | N3-H1_12-25 | 1.9682 | 0.1025 |
12 | O2-H21_12-25 | 1.8972 | 0.1279 |
13 | O6-H41_13-24 | 1.9572 | 0.1575 |
13 | H1-N3_13-24 | 1.9697 | 0.0947 |
13 | H21-O2_13-24 | 1.8885 | 0.1198 |
14 | N1-H3_14-23 | 1.9956 | 0.1301 |
14 | H61-O4_14-23 | 1.9698 | 0.1741 |
15 | O6-H41_15-22 | 1.9768 | 0.1639 |
15 | H1-N3_15-22 | 1.9650 | 0.0948 |
15 | H21-O2_15-22 | 1.9144 | 0.1337 |
16 | N1-H3_16-21 | 1.9735 | 0.1203 |
16 | H61-O4_16-21 | 2.0005 | 0.1965 |
17 | O6-H41_17-20 | 1.9676 | 0.1592 |
17 | H1-N3_17-20 | 1.9628 | 0.0918 |
17 | H21-O2_17-20 | 1.8941 | 0.1250 |
18 | H41-O6_18-19 | 2.0052 | 0.2899 |
18 | N3-H1_18-19 | 2.0049 | 0.1455 |
18 | O2-H21_18-19 | 1.9213 | 0.1654 |