Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
- |
C |
- |
G |
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C |
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T |
- |
G |
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G |
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C |
- |
T |
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G |
- |
G |
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C |
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T |
- |
G |
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G |
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C |
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G |
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C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
C |
- |
G |
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C |
- |
G |
- |
A |
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C |
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C |
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G |
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A |
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C |
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C |
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G |
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A |
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C |
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C |
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G |
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C |
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G |
5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 7.647 | 4.955 |
| Mean | Stdev |
1_H21-36_O2-1 | 8.348 | 5.435 |
| Mean | Stdev |
1_O6-36_H41-1 | 7.759 | 5.120 |
| Mean | Stdev |
10_H1-27_N3-10 | 1.972 | 0.096 |
| Mean | Stdev |
10_H21-27_O2-10 | 1.884 | 0.119 |
| Mean | Stdev |
10_O6-27_H41-10 | 1.984 | 0.174 |
| Mean | Stdev |
11_H1-26_N3-11 | 1.963 | 0.093 |
| Mean | Stdev |
11_H21-26_O2-11 | 1.919 | 0.134 |
| Mean | Stdev |
11_O6-26_H41-11 | 1.974 | 0.167 |
| Mean | Stdev |
12_H41-25_O6-12 | 1.988 | 0.173 |
| Mean | Stdev |
12_N3-25_H1-12 | 1.962 | 0.094 |
| Mean | Stdev |
12_O2-25_H21-12 | 1.906 | 0.130 |
| Mean | Stdev |
13_H3-24_N1-13 | 1.962 | 0.117 |
| Mean | Stdev |
13_O4-24_H61-13 | 2.006 | 0.198 |
| Mean | Stdev |
14_H1-23_N3-14 | 1.972 | 0.099 |
| Mean | Stdev |
14_H21-23_O2-14 | 1.886 | 0.122 |
| Mean | Stdev |
14_O6-23_H41-14 | 1.980 | 0.179 |
| Mean | Stdev |
15_H1-22_N3-15 | 1.970 | 0.093 |
| Mean | Stdev |
15_H21-22_O2-15 | 1.922 | 0.133 |
| Mean | Stdev |
15_O6-22_H41-15 | 1.964 | 0.164 |
| Mean | Stdev |
16_H41-21_O6-16 | 1.962 | 0.166 |
| Mean | Stdev |
16_N3-21_H1-16 | 1.962 | 0.093 |
| Mean | Stdev |
16_O2-21_H21-16 | 1.899 | 0.127 |
| Mean | Stdev |
17_H1-20_N3-17 | 2.250 | 0.692 |
| Mean | Stdev |
17_H21-20_O2-17 | 2.098 | 0.714 |
| Mean | Stdev |
17_O6-20_H41-17 | 2.550 | 1.206 |
| Mean | Stdev |
18_H41-19_O6-18 | 8.792 | 5.364 |
| Mean | Stdev |
18_N3-19_H1-18 | 8.578 | 5.432 |
| Mean | Stdev |
18_O2-19_H21-18 | 9.301 | 5.933 |
| Mean | Stdev |
2_H41-35_O6-2 | 2.552 | 1.394 |
| Mean | Stdev |
2_N3-35_H1-2 | 2.295 | 0.962 |
| Mean | Stdev |
2_O2-35_H21-2 | 2.165 | 0.984 |
| Mean | Stdev |
3_H1-34_N3-3 | 1.959 | 0.092 |
| Mean | Stdev |
3_H21-34_O2-3 | 1.904 | 0.127 |
| Mean | Stdev |
3_O6-34_H41-3 | 1.965 | 0.165 |
| Mean | Stdev |
4_H41-33_O6-4 | 1.990 | 0.176 |
| Mean | Stdev |
4_N3-33_H1-4 | 1.973 | 0.095 |
| Mean | Stdev |
4_O2-33_H21-4 | 1.918 | 0.134 |
| Mean | Stdev |
5_H3-32_N1-5 | 1.966 | 0.118 |
| Mean | Stdev |
5_O4-32_H61-5 | 2.003 | 0.194 |
| Mean | Stdev |
6_H1-31_N3-6 | 1.968 | 0.097 |
| Mean | Stdev |
6_H21-31_O2-6 | 1.879 | 0.119 |
| Mean | Stdev |
6_O6-31_H41-6 | 1.985 | 0.182 |
| Mean | Stdev |
7_H1-30_N3-7 | 1.960 | 0.094 |
| Mean | Stdev |
7_H21-30_O2-7 | 1.914 | 0.131 |
| Mean | Stdev |
7_O6-30_H41-7 | 1.971 | 0.166 |
| Mean | Stdev |
8_H41-29_O6-8 | 1.994 | 0.177 |
| Mean | Stdev |
8_N3-29_H1-8 | 1.967 | 0.093 |
| Mean | Stdev |
8_O2-29_H21-8 | 1.910 | 0.132 |
| Mean | Stdev |
9_H3-28_N1-9 | 1.962 | 0.117 |
| Mean | Stdev |
9_O4-28_H61-9 | 2.001 | 0.192 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 7.7593 | 5.1199 |
1 | H1-N3_1-36 | 7.6473 | 4.9550 |
1 | H21-O2_1-36 | 8.3483 | 5.4351 |
2 | H41-O6_2-35 | 2.5520 | 1.3944 |
2 | N3-H1_2-35 | 2.2946 | 0.9622 |
2 | O2-H21_2-35 | 2.1654 | 0.9841 |
3 | O6-H41_3-34 | 1.9652 | 0.1651 |
3 | H1-N3_3-34 | 1.9594 | 0.0921 |
3 | H21-O2_3-34 | 1.9036 | 0.1272 |
4 | H41-O6_4-33 | 1.9897 | 0.1761 |
4 | N3-H1_4-33 | 1.9733 | 0.0954 |
4 | O2-H21_4-33 | 1.9180 | 0.1343 |
5 | H3-N1_5-32 | 1.9665 | 0.1176 |
5 | O4-H61_5-32 | 2.0034 | 0.1944 |
6 | O6-H41_6-31 | 1.9848 | 0.1822 |
6 | H1-N3_6-31 | 1.9683 | 0.0965 |
6 | H21-O2_6-31 | 1.8792 | 0.1194 |
7 | O6-H41_7-30 | 1.9708 | 0.1661 |
7 | H1-N3_7-30 | 1.9605 | 0.0938 |
7 | H21-O2_7-30 | 1.9144 | 0.1314 |
8 | H41-O6_8-29 | 1.9945 | 0.1769 |
8 | N3-H1_8-29 | 1.9672 | 0.0926 |
8 | O2-H21_8-29 | 1.9101 | 0.1318 |
9 | H3-N1_9-28 | 1.9617 | 0.1167 |
9 | O4-H61_9-28 | 2.0012 | 0.1916 |
10 | O6-H41_10-27 | 1.9838 | 0.1744 |
10 | H1-N3_10-27 | 1.9722 | 0.0958 |
10 | H21-O2_10-27 | 1.8838 | 0.1195 |
11 | O6-H41_11-26 | 1.9738 | 0.1665 |
11 | H1-N3_11-26 | 1.9629 | 0.0926 |
11 | H21-O2_11-26 | 1.9191 | 0.1340 |
12 | H41-O6_12-25 | 1.9883 | 0.1730 |
12 | N3-H1_12-25 | 1.9620 | 0.0941 |
12 | O2-H21_12-25 | 1.9064 | 0.1298 |
13 | H3-N1_13-24 | 1.9624 | 0.1169 |
13 | O4-H61_13-24 | 2.0065 | 0.1978 |
14 | O6-H41_14-23 | 1.9801 | 0.1789 |
14 | H1-N3_14-23 | 1.9716 | 0.0985 |
14 | H21-O2_14-23 | 1.8863 | 0.1225 |
15 | O6-H41_15-22 | 1.9639 | 0.1643 |
15 | H1-N3_15-22 | 1.9704 | 0.0927 |
15 | H21-O2_15-22 | 1.9223 | 0.1332 |
16 | H41-O6_16-21 | 1.9618 | 0.1659 |
16 | N3-H1_16-21 | 1.9621 | 0.0931 |
16 | O2-H21_16-21 | 1.8986 | 0.1266 |
17 | O6-H41_17-20 | 2.5499 | 1.2060 |
17 | H1-N3_17-20 | 2.2500 | 0.6918 |
17 | H21-O2_17-20 | 2.0982 | 0.7143 |
18 | H41-O6_18-19 | 8.7920 | 5.3637 |
18 | N3-H1_18-19 | 8.5781 | 5.4317 |
18 | O2-H21_18-19 | 9.3006 | 5.9329 |