Refinement of the amber force field for nucleic acids simulations: PARMBSC0



To download the article, click [here]
For supplementary info, click [here]

General instructions for using parmbsc0 parameters
Frcmod file with the newly derived parameters
Library with modified DNA nucleotides
Library with modified RNA nucleotides
Benchmarking simulations of a wide range of nucleic acids structures
Nottingham DNA molecular dynamics database
University of Utah very long DNA simulations with parm99
Ascona ABC-consortium B-DNA simulations webpage

Simulations powered by MareNostrum @ Barcelona Supercomputing Center


[contact M.Orozco] [contact A.Perez] [contact I.Marchan]

© 2006. Molecular Modelling & Bioinformatics Unit. IRBB-PCB & University of Barcelona