Biblio

Ab initio study of the structural, tautomeric, pairing, and electronic properties of seleno-derivatives of thymine., Vázquez-Mayagoitia, Alvaro, Huertas Oscar, Brancolini Giorgia, Migliore Agostino, Sumpter Bobby G., Orozco Modesto, F Luque Javier, Di Felice Rosa, and Fuentes-Cabrera Miguel , J Phys Chem B, 2009 Oct 29, Volume 113, p.14465-72, (2009)

Ab initio study of naphtho-homologated DNA bases., Vazquez-Mayagoita, Alvaro, Huertas Oscar, Fuentes-Cabrera Miguel, Sumpter Bobby G., Orozco Modesto, and F Luque Javier , J Phys Chem B, 2008 Feb 21, Volume 112, p.2179-86, (2008)

Alternative splicing mechanisms for the modulation of protein function: conservation between human and other species., Valenzuela, Abel, Talavera David, Orozco Modesto, and de la Cruz Xavier , J Mol Biol, 2004 Jan 9, Volume 335, p.495-502, (2004)

Alternative splicing of transcription factors’ genes: beyond the increase of proteome diversity., Talavera, David, Orozco Modesto, and de la Cruz Xavier , Comp Funct Genomics, 2009, p.905894, (2009)

Are the hydrogen bonds of RNA (AU) stronger than those of DNA (AT)? A quantum mechanics study., Pérez, Alberto, Sponer Jiri, Jurecka Petr, Hobza Pavel, F Luque Javier, and Orozco Modesto , Chemistry, 2005 Aug 19, Volume 11, p.5062-6, (2005)

Approaching Elastic Network Models to Molecular Dynamics Flexibility, Orellana, Laura, Rueda Manuel, Ferrer-Costa Carles, Lopez-Blanco José Ramón, Chacón Pablo, and Orozco Modesto , Journal of Chemical Theory and Computation, Volume 6, p.2910-2923, (2010)

An atomistic view to the gas phase proteome., Meyer, Tim, de la Cruz Xavier, and Orozco Modesto , Structure, 2009 Jan 14, Volume 17, p.88-95, (2009)

Another Coarse Grain Model for Aqueous Solvation: WAT FOUR?, Darré, Leonardo, Machado Matias R., Dans Pablo Daniel, Herrera Fernando E., and Pantano Sergio , Journal of Chemical Theory and Computation, Volume 6, Number 12, p.3793–3807, (2010)

Assessing the Accuracy of the SIRAH Force Field to Model DNA at Coarse Grain Level, Dans, Pablo Daniel, Darré Leonardo, Machado Matias R., Zeida Ari, Brandner Astrid F., and Pantano Sergio , Advances in Bioinformatics and Computational Biology, p.71–81, (2013)

Application of Drug-Perturbed Essential Dynamics/Molecular Dynamics (ED/MD) to Virtual Screening and Rational Drug Design, Chaudhuri, Rima, Carrillo Oliver, Laughton Charles A., and Orozco Modesto , Journal of Chemical Theory and Computation, 2012/00/10, Volume 8, p.2204 - 2214, (2012)

Adenovirus-mediated wt-p16 reintroduction induces cell cycle arrest or apoptosis in pancreatic cancer., Calbó, J, Marotta M, Cascalló M, Roig J M., Gelpí Josep-Lluis, Fueyo J, and Mazo A , Cancer Gene Ther, 2001 Oct, Volume 8, p.740-50, (2001)

Allosterism and signal transfer in DNA, Balaceanu, Alexandra, Pérez Alberto, Dans Pablo D., and Orozco Modesto , Nucleic Acids Research, 2018/09/06, Volume 46, Issue 15, p.7554 - 7565, (2018)

Antiparallel triple helices. Structural characteristics and stabilization by 8-amino derivatives., Aviñó, Anna, Cubero Elena, González Carlos, Eritja Ramon, and Orozco Modesto , J Am Chem Soc, 2003 Dec 24, Volume 125, p.16127-38, (2003)

AutoDock Bias: improving binding mode prediction and virtual screening using known protein–ligand interactions, Arcon, Juan Pablo, Modenutti Carlos P., Avendaño Demian, Lopez Elias D., Defelipe Lucas A., Ambrosio Francesca Alessandra, Turjanski Adrian G., Forli Stefano, and Martí Marcelo A. , Bioinformatics, 2019, Volume 35, Issue 19, p.3836 - 3838, (2019)

An artificial DNAzyme RNA ligase shows a reaction mechanism resembling that of cellular polymerases, Aranda, Juan, Terrazas Montserrat, Gómez Hansel, Villegas Núria, and Orozco Modesto , Nature Catalysis, 06/2019, Volume 2, Issue 6, p.544 - 552, (2019)