Biblio

Found 27 results
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DASiR: Distributed Annotation System in R, Flores, Oscar, and Mantsoki Anna , (2013)
Data mining of molecular dynamics trajectories of nucleic acids., Noy, Agnes, Meyer Tim, Rueda Manuel, Ferrer Carles, Valencia Antonion, Pérez Alberto, de la Cruz Xavier, López-Bes J M., Pouplana R, Fernandez-Recio J, et al. , J Biomol Struct Dyn, 2006 Feb, Volume 23, p.447-56, (2006)
De novo design of a non-local β-sheet protein with high stability and accuracy, Marcos, Enrique, Chidyausiku Tamuka M., McShan Andrew C., Evangelidis Thomas, Nerli Santrupti, Carter Lauren, Nivón Lucas G., Davis Audrey, Oberdorfer Gustav, Tripsianes Konstantinos, et al. , Nature structural & molecular biology, 11/2018, Volume 25, Issue 11, p.1028 - 1034, (2018)
Deciphering the deformation modes associated with function retention and specialization in members of the Ras superfamily., Raimondi, Francesco, Orozco Modesto, and Fanelli Francesca , Structure, 2010 Mar 10, Volume 18, p.402-14, (2010)
Deficient Endoplasmic Reticulum-Mitochondrial Phosphatidylserine Transfer Causes Liver Disease, Hernández-Alvarez, María Isabel, Sebastián David, Vives Sara, Ivanova Saška, Bartoccioni Paola, Kakimoto Pamela, Plana Natalia, Veiga Sónia R., Hernández Vanessa, Vasconcelos Nuno, et al. , Cell, 05/2019, Volume 177, Issue 4, p.881 - 895.e17, (2019)
Defining the nature of thermal intermediate in 3 state folding proteins: apoflavodoxin, a study case., García-Fandiño, Rebeca, Bernadó Pau, Ayuso-Tejedor Sara, Sancho Javier, and Orozco Modesto , PLoS Comput Biol, 2012, Volume 8, p.e1002647, (2012)
A deletion at ADAMTS9-MAGI1 locus is associated with psoriatic arthritis risk., Julià, Antonio, Pinto José Antonio, Gratacós Jordi, Queiró Rubén, Ferrándiz Carlos, Fonseca Eduardo, Montilla Carlos, Torre-Alonso Juan Carlos, Puig Lluís, Venegas José Javier Pé, et al. , Ann Rheum Dis, 2015 Oct, Volume 74, p.1875-81, (2015)
Density functional theory characterization and descriptive analysis of cisplatin and related compounds, Dans, Pablo Daniel, and E Coitiño Laura , Journal of chemical information and modeling, Volume 49, Number 6, p.1407–1419, (2009)
Design of peptide-membrane interactions to modulate single-file water transport through modified gramicidin channels., Portella, Guillem, Polupanow Tanja, Zocher Florian, Boytsov Danila A., Pohl Peter, Diederichsen Ulf, and de Groot Bert L. , Biophys J, 2012 Oct 17, Volume 103, p.1698-705, (2012)
Design, synthesis, and biological evaluation of dual binding site acetylcholinesterase inhibitors: new disease-modifying agents for Alzheimer’s disease., Muñoz-Ruiz, Pilar, Rubio Laura, García-Palomero Esther, Dorronsoro Isabel, del Monte-Millán María, Valenzuela Rita, Usán Paola, de Austria Celia, Bartolini Manuela, Andrisano Vincenza, et al. , J Med Chem, 2005 Nov 17, Volume 48, p.7223-33, (2005)
Destabilization of quadruplex DNA by 8-aminoguanine., de la Osa, Jaime Lopez, González Carlos, Gargallo Raimundo, Rueda Manuel, Cubero Elena, Orozco Modesto, Aviñó Anna, and Eritja Ramon , Chembiochem, 2006 Jan, Volume 7, p.46-8, (2006)
Determination of a Structural Ensemble Representing the Dynamics of a G-Quadruplex DNA, Portella, Guillem, Orozco Modesto, and Vendruscolo Michele , Biochemistry, 12/2019, (2019)
Determining promoter location based on DNA structure first-principles calculations., J Goñi, Ramon, Pérez Alberto, Torrents David, and Orozco Modesto , Genome Biol, 2007, Volume 8, p.R263, (2007)
Differential stability of 2’F-ANA*RNA and ANA*RNA hybrid duplexes: roles of structure, pseudohydrogen bonding, hydration, ion uptake and flexibility., Watts, Jonathan K., Martín-Pintado Nerea, Gómez-Pinto Irene, Schwartzentruber Jeremy, Portella Guillem, Orozco Modesto, González Carlos, and Damha Masad J. , Nucleic Acids Res, 2010 Apr, Volume 38, p.2498-511, (2010)
Direct measurement of the dielectric polarization properties of DNA., Cuervo, Ana, Dans Pablo D., Carrascosa José L., Orozco Modesto, Gomila Gabriel, and Fumagalli Laura , Proc Natl Acad Sci U S A, 2014 Sep 2, Volume 111, p.E3624-30, (2014)
Discrete Molecular Dynamics Approach to the Study of Disordered and Aggregating Proteins, Emperador, Agustí, and Orozco Modesto , Journal of Chemical Theory and Computation, 03/2017, Volume 13, Issue 3, p.1454 - 1461, (2017)
Dispersion and repulsion contributions to the solvation free energy: comparison of quantum mechanical and classical approaches in the polarizable continuum model., Curutchet, Carles, Orozco Modesto, F Luque Javier, Mennucci Benedetta, and Tomasi Jacopo , J Comput Chem, 2006 Nov 30, Volume 27, p.1769-80, (2006)
Dissection of the recognition properties of p38 MAP kinase. Determination of the binding mode of a new pyridinyl-heterocycle inhibitor family., Soliva, Robert, Gelpí Josep-Lluis, Almansa Carmen, Virgili Marina, and Orozco Modesto , J Med Chem, 2007 Jan 25, Volume 50, p.283-93, (2007)
A DNA methylation map of human cancer at single base-pair resolution, Vidal, E, Sayols S, Moran S, Guillaumet-Adkins A, Schroeder M P., Royo R, Orozco Modesto, Gut M, Gut I, Lopez-Bigas N, et al. , Oncogene, 06/2017, p.1-10, (2017)
DNA specificities modulate the binding of human transcription factor A to mitochondrial DNA control region, Cuppari, Anna, Fernández-Millán Pablo, Battistini Federica, Tarrés-Solé Aleix, Lyonnais Sébastien, Iruela Guillermo, Ruiz-López Elena, Enciso Yuliana, Rubio-Cosials Anna, Prohens Rafel, et al. , Nucleic acids research, 09/2019, Volume 47, Issue 12, p.6519 - 6537, (2019)
DNA structure directs positioning of the mitochondrial genome packaging protein Abf2p, Chakraborty, Arka, Lyonnais Sébastien, Battistini Federica, Hospital Adam, Medici Giorgio, Prohens Rafel, Orozco Modesto, Vilardell Josep, and Solà Maria , Nucleic Acids Research, 11/2016, (2016)
The DNA-forming properties of 6-selenoguanine, Faustino, Ignacio, Curutchet Carles, F Luque Javier, and Orozco Modesto , Phys. Chem. Chem. Phys., Volume 16, p.1101-1110, (2014)
DNAlive: a tool for the physical analysis of DNA at the genomic scale., J Goñi, Ramon, Fenollosa Carlos, Pérez Alberto, Torrents David, and Orozco Modesto , Bioinformatics, 2008 Aug 1, Volume 24, p.1731-2, (2008)
DNA-triplex stabilizing properties of 8-aminoguanine, Soliva, Robert, García Ramón Güimil, J. Blas Ramón, Eritja Ramon, Asensio Juan Luis, González Carlos, F. Luque Javier, and Orozco Modesto , Nucleic Acids Research, Volume 28, p.4531-4539, (2000)
Dramatic effect of furanose C2’ substitution on structure and stability: directing the folding of the human telomeric quadruplex with a single fluorine atom., Martín-Pintado, Nerea, Yahyaee-Anzahaee Maryam, Deleavey Glen F., Portella Guillem, Orozco Modesto, Damha Masad J., and González Carlos , J Am Chem Soc, 2013 Apr 10, Volume 135, p.5344-7, (2013)
The dynamic view of proteins: comment on "Comparing proteins to their internal dynamics: exploring structure-function relationships beyond static structural alignments"., Orozco, Modesto , Phys Life Rev, 2013 Mar, Volume 10, p.29-30; discussion 39-40, (2013)
Dynamics of B-DNA on the microsecond time scale., Pérez, Alberto, F Luque Javier, and Orozco Modesto , J Am Chem Soc, 2007 Nov 28, Volume 129, p.14739-45, (2007)