nucleR: a package for non-parametric nucleosome positioning.

TitlenucleR: a package for non-parametric nucleosome positioning.
Publication TypeJournal Article
Year of Publication2011
AuthorsFlores, Oscar, and Orozco Modesto
JournalBioinformatics
Volume27
Pagination2149-50
Date Published2011 Aug 1
ISSN1367-4811
KeywordsAlgorithms, Fourier Analysis, Genomics, Nucleosomes, Software
Abstract

SUMMARY: nucleR is an R/Bioconductor package for a flexible and fast recognition of nucleosome positioning from next generation sequencing and tiling arrays experiments. The software is integrated with standard high-throughput genomics R packages and allows for in situ visualization as well as to export results to common genome browser formats.

AVAILABILITY: Additional information and methodological details can be found at http://mmb.pcb.ub.es/nucleR

DOI10.1093/bioinformatics/btr345